Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008645.1 Corchorus olitorius cultivar O-4 contig08672, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1186
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:601 original size:21 final size:20

Alignment explanation


    Indices: 575--614  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        565 ATTCCCATTA

                                 
        575 GAAAAGAAAAAAAGAATAAAT
          1 GAAAAGAAAAAAA-AATAAAT

                    *          
        596 GAAAAGAATAAAAAATAAA
          1 GAAAAGAAAAAAAAATAAA

        615 AAAAAAAGAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    6  0.33
  21   12  0.67

ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10


Consensus pattern (20 bp):   
GAAAAGAAAAAAAAATAAAT

Found at i:725 original size:14 final size:15

Alignment explanation


    Indices: 692--730  Score: 53
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        682 GAGAGACATT

                         * 
        692 TTTTCAAAAAAATTG
          1 TTTTCAAAAAAATGG

                   *       
        707 TTTTCAAGAAAA-GG
          1 TTTTCAAAAAAATGG

                      
        721 TTTTCAAAAA
          1 TTTTCAAAAA

        731 TGAGTTTGCA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  14   10  0.48
  15   11  0.52

ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36


Consensus pattern (15 bp):   
TTTTCAAAAAAATGG
Done.