Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000865.1 Corchorus olitorius cultivar O-4 contig00865, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5887
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35


Found at i:1667 original size:13 final size:13

Alignment explanation


    Indices: 1649--1674  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1639 ATTCTCTGCC

                         
       1649 CCATTTTTTTTGA
          1 CCATTTTTTTTGA

                         
       1662 CCATTTTTTTTGA
          1 CCATTTTTTTTGA

       1675 ACGAAAATCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.15, G:0.08, T:0.62


Consensus pattern (13 bp):   
CCATTTTTTTTGA
Done.