Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008659.1 Corchorus olitorius cultivar O-4 contig08686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30


Found at i:317 original size:23 final size:22

Alignment explanation


    Indices: 282--327  Score: 65
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        272 TCAAATTTGG

                  *                
        282 GTCCAGTCGTCAAACCCGCGCGC
          1 GTCCAGGCGTC-AACCCGCGCGC

                    *             
        305 GTCCAGGCTTCAACCCGCGCGC
          1 GTCCAGGCGTCAACCCGCGCGC

             
        327 G
          1 G

        328 GCTAGTGCCA


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  22   12  0.57
  23    9  0.43

ACGTcount: A:0.15, C:0.43, G:0.28, T:0.13


Consensus pattern (22 bp):   
GTCCAGGCGTCAACCCGCGCGC
Done.