Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008666.1 Corchorus olitorius cultivar O-4 contig08693, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4166
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34


Found at i:1792 original size:2 final size:2

Alignment explanation


    Indices: 1785--1834  Score: 57
    Period size: 2  Copynumber: 23.5  Consensus size: 2

       1775 TATCATTAAT

                                                                          
       1785 TA TA TA TA TA TA TA TA TA TA TA TA TA TGA -A TGA TA TA TA TGA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T-A TA TA TA T-A

                       
       1827 TA TGA TA T
          1 TA T-A TA T

       1835 GATTAATTAC


Statistics
Matches: 43,  Mismatches: 0, Indels: 10
        0.81            0.00        0.19

Matches are distributed among these distances:
   1    1  0.02
   2   35  0.81
   3    7  0.16

ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46


Consensus pattern (2 bp):   
TA

Done.