Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008674.1 Corchorus olitorius cultivar O-4 contig08701, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1197
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40


Found at i:492 original size:11 final size:11

Alignment explanation


    Indices: 476--500  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        466 AGAAAATTGT

                       
        476 TTGTTTTTGGA
          1 TTGTTTTTGGA

                       
        487 TTGTTTTTGGA
          1 TTGTTTTTGGA

               
        498 TTG
          1 TTG

        501 ATTATTCCCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.08, C:0.00, G:0.28, T:0.64


Consensus pattern (11 bp):   
TTGTTTTTGGA
Done.