Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008679.1 Corchorus olitorius cultivar O-4 contig08706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1786
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:356 original size:14 final size:16

Alignment explanation


    Indices: 317--360  Score: 56
    Period size: 16  Copynumber: 2.9  Consensus size: 16

        307 TTAGTATCTA

                    **      
        317 ATATATATGTATATAT
          1 ATATATATACATATAT

                            
        333 ATATATATACATATAT
          1 ATATATATACATATAT

                          
        349 -TATA-ATACATAT
          1 ATATATATACATAT

        361 CTTTTATTAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  14    8  0.31
  15    4  0.15
  16   14  0.54

ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45


Consensus pattern (16 bp):   
ATATATATACATATAT
Done.