Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008680.1 Corchorus olitorius cultivar O-4 contig08707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33


Found at i:474 original size:23 final size:21

Alignment explanation


    Indices: 433--481  Score: 53
    Period size: 23  Copynumber: 2.2  Consensus size: 21

        423 AATTCTTTGA

                        * *        
        433 TTATTTAATAATTATTAATTAGT
          1 TTATTTAATAATCAATAA-T-GT

                   *             
        456 TTATTTACTAATCAATAATGT
          1 TTATTTAATAATCAATAATGT

                 
        477 TTATT
          1 TTATT

        482 AGTTTTAATT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  21    7  0.30
  22    1  0.04
  23   15  0.65

ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55


Consensus pattern (21 bp):   
TTATTTAATAATCAATAATGT
Done.