Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008698.1 Corchorus olitorius cultivar O-4 contig08725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25


Found at i:716 original size:56 final size:56

Alignment explanation


    Indices: 656--825  Score: 331
    Period size: 56  Copynumber: 3.0  Consensus size: 56

        646 TAAACTACTT

                                                                    
        656 ACAAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGC
          1 ACAAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGC

                                                                    
        712 ACAAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGC
          1 ACAAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGC

                                                                     
        768 ACAAAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGC
          1 AC-AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGC

             
        825 A
          1 A

        826 AAAAAAAAAA


Statistics
Matches: 113,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  56   58  0.51
  57   55  0.49

ACGTcount: A:0.38, C:0.19, G:0.25, T:0.18


Consensus pattern (56 bp):   
ACAAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGC

Found at i:802 original size:57 final size:57

Alignment explanation


    Indices: 658--830  Score: 330
    Period size: 57  Copynumber: 3.1  Consensus size: 57

        648 AACTACTTAC

                                                                     
        658 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCAC-
          1 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACA

                                                                     
        714 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACA
          1 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACA

                                                                   * 
        771 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCAAA
          1 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACA

               
        828 AAA
          1 AAA

        831 AAAAAAACCA


Statistics
Matches: 115,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
  56   56  0.49
  57   59  0.51

ACGTcount: A:0.40, C:0.18, G:0.24, T:0.17


Consensus pattern (57 bp):   
AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACA
Done.