Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008702.1 Corchorus olitorius cultivar O-4 contig08729, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1140
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39


Found at i:703 original size:36 final size:36

Alignment explanation


    Indices: 656--725  Score: 106
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        646 GAGATTTTGG

                         *                       
        656 AGAAATATGATAATCAAAAT-TACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAATCT-CAAAAAATGTAATA

                                       *      
        692 AGAAATATGATAACCAAAATCTCAAAAGATGTAA
          1 AGAAATATGATAACCAAAATCTCAAAAAATGTAA

        726 GGTTATTGAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  36   30  0.97
  37    1  0.03

ACGTcount: A:0.59, C:0.09, G:0.10, T:0.23


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATCTCAAAAAATGTAATA
Done.