Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008705.1 Corchorus olitorius cultivar O-4 contig08732, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1173
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22


Found at i:288 original size:154 final size:154

Alignment explanation


    Indices: 1--1173  Score: 1776
    Period size: 154  Copynumber: 7.6  Consensus size: 154

                               *  *                                          
          1 ACAGTGGACTAATCTCACTGAAGTGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

                                                        *  *    *     *  * * 
         66 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTGATAGGCCCAAAAAAATAGG
         66 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCACAAAATAACAAG

                           *        
        131 TGTTCCAAATGAGCTGAAAACTTC
        131 TGTTCCAAATGAGCTAAAAACTTC

                                                  *              *           
        155 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCTATAAACAATGGAAAAAAAACCATTAA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

            *        *                                                    *  
        220 CGTTTGCCACATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCACAAAATAACTAG
         66 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCACAAAATAACAAG

                                   *
        285 TGTTCCAAATGAGCTAAAAACTTT
        131 TGTTCCAAATGAGCTAAAAACTTC

                           *  *                                              
        309 ACAGTGGACTAATCTTACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

                                                        *  *    *  *       * 
        374 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTGATAGGCCCATAATAACAGG
         66 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCACAAAATAACAAG

                                    
        439 TGTTCCAAATGAGCTAAAAACTTC
        131 TGTTCCAAATGAGCTAAAAACTTC

                      *                 *  *                          *    * 
        463 ACAGTGGACTGATCTCACTAAAATGATTTTACTTAGGCCATAAACAATGGAAAGAAAAGCATTGA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

                                             *          *  *                 
        528 GGTTTGCCAAATCGAAGACGATTCAAAACGTCAGTAATGGGCCCTGATAGGC-CTAAAATAACAA
         66 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCAC-AAAATAACAA

                                     
        592 GTGTTCCAAATGAGCTAAAAACTTC
        130 GTGTTCCAAATGAGCTAAAAACTTC

                                                    *            *    *   ** 
        617 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCAAAAACAATGGAAAAAAAAGCATCGA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

                         *               *                     *             
        682 GGTTTGCCAAATCAAAGACGATTCAAAATGGT-ACTAATGGGCCCCGAAAGACACAAAATAACAA
         66 GGTTTGCCAAATCGAAGACGATTCAAAA-CGTCACTAATGGGCCCCGAAAGGCACAAAATAACAA

                                     
        746 GTGTTCCAAATGAGCTAAAAACTTC
        130 GTGTTCCAAATGAGCTAAAAACTTC

                                                                             
        771 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

                                   *                     *       *  *    *  *
        836 GGTTTGCCAAATCGAAGACGATTTAAAACGTCACTAATGGG-CCCTAATAGGCCCATAATAGCAG
         66 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAA-AGGCACAAAATAACAA

              *  *                   
        900 GTATTTCAAATGAGCTAAAAACTTC
        130 GTGTTCCAAATGAGCTAAAAACTTC

                                                    *       *    *    *   ** 
        925 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCAAAAACAATTGAAAAAAAAGCATCGA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

                         *              * **                  *              
        990 GGTTTGCCAAATCAAAGACGATTCAAAATGGAACTAATGGGCCCCGAAAGACACAAAATAACAAG
         66 GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCACAAAATAACAAG

                                    
       1055 TGTTCCAAATGAGCTAAAAACTTC
        131 TGTTCCAAATGAGCTAAAAACTTC

                                               *                             
       1079 ACAGTGGACTAATCTCACTAAAATGATTATAGTTACGCCATAAACAATGGAAAGAAAACCATTAA
          1 ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA

                                          
       1144 GGTTTGCCAAATCGAAGACGATTCAAAACG
         66 GGTTTGCCAAATCGAAGACGATTCAAAACG


Statistics
Matches: 919,  Mismatches: 94, Indels: 12
        0.90            0.09        0.01

Matches are distributed among these distances:
 153    8  0.01
 154  903  0.98
 155    8  0.01

ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22


Consensus pattern (154 bp):   
ACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAACCATTAA
GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCACAAAATAACAAG
TGTTCCAAATGAGCTAAAAACTTC

Done.