Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008721.1 Corchorus olitorius cultivar O-4 contig08748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:688 original size:21 final size:21

Alignment explanation


    Indices: 664--736  Score: 74
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        654 GGCTTGGAAT

                                 
        664 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATGGCC

                *          *  *  
        685 GGTGGTGGCACGGGCTTGACC
          1 GGTGATGGCACGGGCATGGCC

                *          *    * 
        706 GGTGGTGGCACGGTGAATGGGC
          1 GGTGATGGCACGG-GCATGGCC

               *     
        728 GGTAATGGC
          1 GGTGATGGC

        737 TTGGTAGTGG


Statistics
Matches: 42,  Mismatches: 9, Indels: 1
        0.81            0.17        0.02

Matches are distributed among these distances:
  21   31  0.74
  22   11  0.26

ACGTcount: A:0.14, C:0.19, G:0.49, T:0.18


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATGGCC
Done.