Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008723.1 Corchorus olitorius cultivar O-4 contig08750, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1116
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:224 original size:27 final size:27

Alignment explanation


    Indices: 171--225  Score: 65
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        161 TGATAGTCTG

                         *   * ** *    
        171 GATAAATTGAGATTTTTTTTTTTTCAT
          1 GATAAATTGAGATCTTTCTAATGTCAT

                                       
        198 GATAAATTGAGATCTTTCTAATGTCAT
          1 GATAAATTGAGATCTTTCTAATGTCAT

             
        225 G
          1 G

        226 TGACTAGTAG


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49


Consensus pattern (27 bp):   
GATAAATTGAGATCTTTCTAATGTCAT
Done.