Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008728.1 Corchorus olitorius cultivar O-4 contig08755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4257
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35


Found at i:328 original size:16 final size:16

Alignment explanation


    Indices: 303--333  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        293 TCTACATATT

                            
        303 ATAAAAATTTAGTAAA
          1 ATAAAAATTTAGTAAA

                 *         
        319 ATAAATATTTAGTAA
          1 ATAAAAATTTAGTAA

        334 TATTTTTTAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35


Consensus pattern (16 bp):   
ATAAAAATTTAGTAAA

Found at i:692 original size:27 final size:27

Alignment explanation


    Indices: 655--713  Score: 73
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        645 ATATAAAAAA

                                          
        655 AATTGAAAAAATAACAGAAGAAAATCCGCC
          1 AATT-AAAAAA-AA-AGAAGAAAATCCGCC

                          *        *   
        685 AATTAAAAAAAAAGTAGAAAATCTGCC
          1 AATTAAAAAAAAAGAAGAAAATCCGCC

              
        712 AA
          1 AA

        714 AATTTGATTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  27   15  0.56
  28    2  0.07
  29    6  0.22
  30    4  0.15

ACGTcount: A:0.59, C:0.14, G:0.12, T:0.15


Consensus pattern (27 bp):   
AATTAAAAAAAAAGAAGAAAATCCGCC
Done.