Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008730.1 Corchorus olitorius cultivar O-4 contig08757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1308
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32


Found at i:1002 original size:76 final size:77

Alignment explanation


    Indices: 907--1062  Score: 296
    Period size: 76  Copynumber: 2.0  Consensus size: 77

        897 AAAAATTGGG

                                                                             
        907 GAATAATCAATCCAAAAACAATCCAATCAACAAACAATTTTCTATCCTAA-TCTCATGCAAATAA
          1 GAATAATCAATCCAAAAACAATCCAATCAACAAACAATTTTCTATCCTAAGTCTCATGCAAATAA

                        
        971 TAACTAGCATAT
         66 TAACTAGCATAT

                                                                             
        983 GAATAATCAATCCAAAAACAATCCAATCAACAAACAATTTTCTATCCTAAGTTCTCATGCAAATA
          1 GAATAATCAATCCAAAAACAATCCAATCAACAAACAATTTTCTATCCTAAG-TCTCATGCAAATA

                         
       1048 ATAACTAGCATAT
         65 ATAACTAGCATAT

              
       1061 GA
          1 GA

       1063 CTCAATTATT


Statistics
Matches: 78,  Mismatches: 0, Indels: 2
        0.98            0.00        0.03

Matches are distributed among these distances:
  76   50  0.64
  78   28  0.36

ACGTcount: A:0.47, C:0.22, G:0.05, T:0.26


Consensus pattern (77 bp):   
GAATAATCAATCCAAAAACAATCCAATCAACAAACAATTTTCTATCCTAAGTCTCATGCAAATAA
TAACTAGCATAT
Done.