Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008737.1 Corchorus olitorius cultivar O-4 contig08764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 902

Length: 1504
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28


Found at i:261 original size:15 final size:15

Alignment explanation


    Indices: 238--272  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        228 GGGGAATAAT

                *          
        238 CAATCCAAAAACAAA
          1 CAATTCAAAAACAAA

                       *   
        253 CAATTCAAAAATAAA
          1 CAATTCAAAAACAAA

                 
        268 CAATT
          1 CAATT

        273 TTCTATCCTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.63, C:0.20, G:0.00, T:0.17


Consensus pattern (15 bp):   
CAATTCAAAAACAAA
Done.