Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000874.1 Corchorus olitorius cultivar O-4 contig00874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:406 original size:8 final size:8

Alignment explanation


    Indices: 389--422  Score: 61
    Period size: 8  Copynumber: 4.4  Consensus size: 8

        379 TTGGAATAAA

                    
        389 TTTC-TTT
          1 TTTCTTTT

                    
        396 TTTCTTTT
          1 TTTCTTTT

                    
        404 TTTCTTTT
          1 TTTCTTTT

                    
        412 TTTCTTTT
          1 TTTCTTTT

               
        420 TTT
          1 TTT

        423 TTTGGTGAAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   7    4  0.15
   8   22  0.85

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (8 bp):   
TTTCTTTT

Done.