Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008741.1 Corchorus olitorius cultivar O-4 contig08768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35


Found at i:726 original size:60 final size:61

Alignment explanation


    Indices: 659--786  Score: 170
    Period size: 67  Copynumber: 2.0  Consensus size: 61

        649 GCATTAAATT

                                                                          
        659 AAGGTTATAAACC-TATTAACAGACCTTTTTTTTAATTCCG-AAATTGCGGATTCGCGTTAA
          1 AAGGTTATAAACCTTATTAACAGACC-TTTTTTTAATTCCGTAAATTGCGGATTCGCGTTAA

                                                *                            
        719 AAGGTTATAAACCTATTTATTAACAGACCTTTTTTTCATTCCGTATTAAATTGCGGATTCGCGTT
          1 AAGGTTATAAACC---TTATTAACAGACCTTTTTTTAATTCCG---TAAATTGCGGATTCGCGTT

              
        784 AA
         60 AA

             
        786 A
          1 A

        787 TTGTTGCCAT


Statistics
Matches: 59,  Mismatches: 1, Indels: 9
        0.86            0.01        0.13

Matches are distributed among these distances:
  60   13  0.22
  63   13  0.22
  64   12  0.20
  67   21  0.36

ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38


Consensus pattern (61 bp):   
AAGGTTATAAACCTTATTAACAGACCTTTTTTTAATTCCGTAAATTGCGGATTCGCGTTAA
Done.