Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008742.1 Corchorus olitorius cultivar O-4 contig08769, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38


Found at i:283 original size:3 final size:3

Alignment explanation


    Indices: 275--369  Score: 181
    Period size: 3  Copynumber: 31.7  Consensus size: 3

        265 ACTCCCAAAT

                          *                                                
        275 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

                                                                          
        323 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

        370 TCACTTCAAA


Statistics
Matches: 90,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   3   90  1.00

ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67


Consensus pattern (3 bp):   
TTA

Done.