Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008752.1 Corchorus olitorius cultivar O-4 contig08779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30


Found at i:1008 original size:69 final size:67

Alignment explanation


    Indices: 836--1025  Score: 262
    Period size: 67  Copynumber: 2.8  Consensus size: 67

        826 AATTAAATGA

                 *            *     *      *       *                         
        836 CATTAATACTAATTGATTTTAATTTGATCAATAT-TCAAATC-AATCAATCAATCAATCAATTTA
          1 CATTAGTACTAATTGATTCTAATTGGATCAAAATAT--ATTCAAATCAATCAATCAATCAATTTA

                
        899 ATAT
         64 ATAT

                                             *                               
        903 CATTAGTACTAATTGATTCTAATTGGATC--AAGATATTCAAATCAATCAATCAATCAATTTAAT
          1 CATTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAATCAATTTAAT

              
        966 AT
         66 AT

                                                                      
        968 CATTTTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAAT
          1 CA--TTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAAT

       1026 TTAATATATA


Statistics
Matches: 110,  Mismatches: 7, Indels: 10
        0.87            0.06        0.08

Matches are distributed among these distances:
  64    3  0.03
  65   29  0.26
  66    1  0.01
  67   53  0.48
  69   24  0.22

ACGTcount: A:0.42, C:0.14, G:0.06, T:0.38


Consensus pattern (67 bp):   
CATTAGTACTAATTGATTCTAATTGGATCAAAATATATTCAAATCAATCAATCAATCAATTTAAT
AT

Done.