Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008761.1 Corchorus olitorius cultivar O-4 contig08788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1117
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:351 original size:14 final size:13

Alignment explanation


    Indices: 332--370  Score: 53
    Period size: 13  Copynumber: 3.0  Consensus size: 13

        322 ACTCAACACT

                          
        332 AACTGACTCGAAAA
          1 AACTGACTC-AAAA

                       * 
        346 AACTGACTCAACA
          1 AACTGACTCAAAA

                         
        359 AACTGACT-AAAA
          1 AACTGACTCAAAA

        371 CCCGACAGAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  12    3  0.13
  13   11  0.48
  14    9  0.39

ACGTcount: A:0.51, C:0.23, G:0.10, T:0.15


Consensus pattern (13 bp):   
AACTGACTCAAAA

Found at i:363 original size:13 final size:13

Alignment explanation


    Indices: 322--366  Score: 54
    Period size: 13  Copynumber: 3.2  Consensus size: 13

        312 CCAGACTCAT

                           
        322 ACTCAACACTAACTG
          1 ACTCAACA--AACTG

                   *      
        337 ACTCGAAAAAACTG
          1 ACTC-AACAAACTG

                         
        351 ACTCAACAAACTG
          1 ACTCAACAAACTG

               
        364 ACT
          1 ACT

        367 AAAACCCGAC


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  13   11  0.41
  14    9  0.33
  15    4  0.15
  16    3  0.11

ACGTcount: A:0.44, C:0.29, G:0.09, T:0.18


Consensus pattern (13 bp):   
ACTCAACAAACTG
Done.