Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008768.1 Corchorus olitorius cultivar O-4 contig08795, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32


Found at i:1376 original size:27 final size:27

Alignment explanation


    Indices: 1340--1533  Score: 307
    Period size: 27  Copynumber: 7.0  Consensus size: 27

       1330 AGAACTCCGA

                                       
       1340 ATCATTCTCTTGAAGCTCATCCTTTTC
          1 ATCATTCTCTTGAAGCTCATCCTTTTC

                                       
       1367 ATCATTCTCTTGAAGCTCATCCTTTTC
          1 ATCATTCTCTTGAAGCTCATCCTTTTC

                               *       
       1394 ATCATTCTCTTGAAGCTCACCCTTTTC
          1 ATCATTCTCTTGAAGCTCATCCTTTTC

                      *    *                 
       1421 ATCATAAATGATCCGCTGAAGCTCATCCTTTTC
          1 ATCAT---T-CT-C-TTGAAGCTCATCCTTTTC

                                       
       1454 ATCATTCTCTTGAAGCTCATCCTTTTC
          1 ATCATTCTCTTGAAGCTCATCCTTTTC

                                       
       1481 ATCATTCTCTTGAAGCTCATCCTTTTC
          1 ATCATTCTCTTGAAGCTCATCCTTTTC

                                      
       1508 ATCATTCTCTTGAAGCTCATCCTTTT
          1 ATCATTCTCTTGAAGCTCATCCTTTT

       1534 TAC


Statistics
Matches: 155,  Mismatches: 6, Indels: 12
        0.90            0.03        0.07

Matches are distributed among these distances:
  27  128  0.83
  28    1  0.01
  29    1  0.01
  30    2  0.01
  31    1  0.01
  32    1  0.01
  33   21  0.14

ACGTcount: A:0.20, C:0.29, G:0.08, T:0.42


Consensus pattern (27 bp):   
ATCATTCTCTTGAAGCTCATCCTTTTC

Found at i:1496 original size:87 final size:87

Alignment explanation


    Indices: 1350--1512  Score: 317
    Period size: 87  Copynumber: 1.9  Consensus size: 87

       1340 ATCATTCTCT

                                                                             
       1350 TGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCACC
          1 TGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCACC

                                  
       1415 CTTTTCATCATAAATGATCCGC
         66 CTTTTCATCATAAATGATCCGC

                                                                           * 
       1437 TGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCATC
          1 TGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCACC

                       
       1502 CTTTTCATCAT
         66 CTTTTCATCAT

       1513 TCTCTTGAAG


Statistics
Matches: 75,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  87   75  1.00

ACGTcount: A:0.21, C:0.29, G:0.09, T:0.41


Consensus pattern (87 bp):   
TGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCATCCTTTTCATCATTCTCTTGAAGCTCACC
CTTTTCATCATAAATGATCCGC
Done.