Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008773.1 Corchorus olitorius cultivar O-4 contig08800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 987

Length: 1646
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26


Found at i:877 original size:22 final size:22

Alignment explanation


    Indices: 849--894  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        839 TCGAAAAAGC

                                  
        849 AGTAGACACATTACATAAGTTG
          1 AGTAGACACATTACATAAGTTG

                                  
        871 AGTAGACACATTACATAAGTTG
          1 AGTAGACACATTACATAAGTTG

              
        893 AG
          1 AG

        895 AAGGTGCTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26


Consensus pattern (22 bp):   
AGTAGACACATTACATAAGTTG
Done.