Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008790.1 Corchorus olitorius cultivar O-4 contig08817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31


Found at i:915 original size:9 final size:9

Alignment explanation


    Indices: 901--926  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        891 GATGCAGCAG

                     
        901 CAGCAACAA
          1 CAGCAACAA

                     
        910 CAGCAACAA
          1 CAGCAACAA

                    
        919 CAGCAACA
          1 CAGCAACA

        927 GCAACAGTCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.54, C:0.35, G:0.12, T:0.00


Consensus pattern (9 bp):   
CAGCAACAA
Done.