Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008794.1 Corchorus olitorius cultivar O-4 contig08821, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 732

Length: 1221
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35


Found at i:625 original size:58 final size:58

Alignment explanation


    Indices: 535--670  Score: 272
    Period size: 58  Copynumber: 2.3  Consensus size: 58

        525 TGGGTTTTTT

                                                                      
        535 TTTTCAACTTAGCGAGCTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGA
          1 TTTTCAACTTAGCGAGCTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGA

                                                                      
        593 TTTTCAACTTAGCGAGCTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGA
          1 TTTTCAACTTAGCGAGCTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGA

                                
        651 TTTTCAACTTAGCGAGCTTT
          1 TTTTCAACTTAGCGAGCTTT

        671 GTAAGTAGTT


Statistics
Matches: 78,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  58   78  1.00

ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40


Consensus pattern (58 bp):   
TTTTCAACTTAGCGAGCTTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGA
Done.