Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008814.1 Corchorus olitorius cultivar O-4 contig08841, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1025
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Found at i:52 original size:18 final size:18

Alignment explanation


    Indices: 29--63  Score: 70
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         19 GTTTGGCCTG

                              
         29 TTCAAAGCACTCAAATTA
          1 TTCAAAGCACTCAAATTA

                             
         47 TTCAAAGCACTCAAATT
          1 TTCAAAGCACTCAAATT

         64 TATCCTTACT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29


Consensus pattern (18 bp):   
TTCAAAGCACTCAAATTA
Done.