Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008819.1 Corchorus olitorius cultivar O-4 contig08846, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1592
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:616 original size:11 final size:11

Alignment explanation


    Indices: 576--609  Score: 59
    Period size: 11  Copynumber: 3.1  Consensus size: 11

        566 AAGAGTAGGG

                       
        576 TCCTTCCTAGC
          1 TCCTTCCTAGC

            *          
        587 ACCTTCCTAGC
          1 TCCTTCCTAGC

                       
        598 TCCTTCCTAGC
          1 TCCTTCCTAGC

             
        609 T
          1 T

        610 TTTTCCTTTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  11   21  1.00

ACGTcount: A:0.12, C:0.44, G:0.09, T:0.35


Consensus pattern (11 bp):   
TCCTTCCTAGC
Done.