Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008823.1 Corchorus olitorius cultivar O-4 contig08850, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 858

Length: 1430
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25


Found at i:670 original size:7 final size:7

Alignment explanation


    Indices: 660--691  Score: 55
    Period size: 7  Copynumber: 4.6  Consensus size: 7

        650 TTTGAAAATT

                   
        660 AATTTAA
          1 AATTTAA

                *  
        667 AATTCAA
          1 AATTTAA

                   
        674 AATTTAA
          1 AATTTAA

                   
        681 AATTTAA
          1 AATTTAA

                
        688 AATT
          1 AATT

        692 ACATGAAGTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41


Consensus pattern (7 bp):   
AATTTAA

Done.