Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008829.1 Corchorus olitorius cultivar O-4 contig08856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 883

Length: 1473
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33


Found at i:1060 original size:13 final size:13

Alignment explanation


    Indices: 1042--1068  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1032 CACCATACAT

                         
       1042 ATTGAATTGAAGG
          1 ATTGAATTGAAGG

                         
       1055 ATTGAATTGAAGG
          1 ATTGAATTGAAGG

             
       1068 A
          1 A

       1069 ATCCGGTGAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30


Consensus pattern (13 bp):   
ATTGAATTGAAGG

Found at i:1221 original size:12 final size:12

Alignment explanation


    Indices: 1204--1229  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1194 TAAGATTCTT

                        
       1204 AATTTAATAAGG
          1 AATTTAATAAGG

                        
       1216 AATTTAATAAGG
          1 AATTTAATAAGG

              
       1228 AA
          1 AA

       1230 GCCAGGAAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31


Consensus pattern (12 bp):   
AATTTAATAAGG
Done.