Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008830.1 Corchorus olitorius cultivar O-4 contig08857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 787

Length: 1312
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:89 original size:21 final size:21

Alignment explanation


    Indices: 63--126  Score: 128
    Period size: 21  Copynumber: 3.0  Consensus size: 21

         53 TCTCAAAACG

                                 
         63 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

                                 
         84 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

                                 
        105 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

             
        126 G
          1 G

        127 CCATGGTTCC


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   43  1.00

ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33


Consensus pattern (21 bp):   
GAATCTATTCCAAACATATAT

Found at i:1299 original size:18 final size:18

Alignment explanation


    Indices: 1276--1310  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1266 ATGATAGTGA

                              
       1276 TAGTGACGATATTGATGC
          1 TAGTGACGATATTGATGC

                    *        
       1294 TAGTGACGCTATTGATG
          1 TAGTGACGATATTGATG

       1311 AT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34


Consensus pattern (18 bp):   
TAGTGACGATATTGATGC
Done.