Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008833.1 Corchorus olitorius cultivar O-4 contig08860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1151
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:698 original size:20 final size:20

Alignment explanation


    Indices: 673--732  Score: 120
    Period size: 20  Copynumber: 3.0  Consensus size: 20

        663 TGCCTATGCT

                                
        673 CAAGCATAGAGTTGATTGAA
          1 CAAGCATAGAGTTGATTGAA

                                
        693 CAAGCATAGAGTTGATTGAA
          1 CAAGCATAGAGTTGATTGAA

                                
        713 CAAGCATAGAGTTGATTGAA
          1 CAAGCATAGAGTTGATTGAA

        733 ATATGCCAAT


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   40  1.00

ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25


Consensus pattern (20 bp):   
CAAGCATAGAGTTGATTGAA
Done.