Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000885.1 Corchorus olitorius cultivar O-4 contig00885, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28


Found at i:275 original size:21 final size:21

Alignment explanation


    Indices: 251--323  Score: 74
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        241 GGCTTGGGAT

                                 
        251 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATGGCC

                *          * **  
        272 GGTGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATGGCC

                *          *      
        293 GGTGGTGGCACGGTGAATGGCC
          1 GGTGATGGCACGG-GCATGGCC

               *     
        315 GGTAATGGC
          1 GGTGATGGC

        324 TTGGTAGTGG


Statistics
Matches: 41,  Mismatches: 10, Indels: 1
        0.79            0.19        0.02

Matches are distributed among these distances:
  21   30  0.73
  22   11  0.27

ACGTcount: A:0.15, C:0.21, G:0.47, T:0.18


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATGGCC
Done.