Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008850.1 Corchorus olitorius cultivar O-4 contig08877, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31


Found at i:703 original size:24 final size:24

Alignment explanation


    Indices: 673--721  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        663 AGAAGGGTGC

                                    
        673 AAAAGTTTACAATGCTTGCTTTAA
          1 AAAAGTTTACAATGCTTGCTTTAA

                     *              
        697 AAAAGTTTAGAATGCTTGCTTTAA
          1 AAAAGTTTACAATGCTTGCTTTAA

             
        721 A
          1 A

        722 TGGCCAACAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37


Consensus pattern (24 bp):   
AAAAGTTTACAATGCTTGCTTTAA
Done.