Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008854.1 Corchorus olitorius cultivar O-4 contig08881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23


Found at i:132 original size:13 final size:13

Alignment explanation


    Indices: 114--140  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        104 GTCACCGGAT

                         
        114 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

                         
        127 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

             
        140 T
          1 T

        141 ATGTATGGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCCTTCAATTCAA
Done.