Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008859.1 Corchorus olitorius cultivar O-4 contig08886, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23


Found at i:575 original size:14 final size:14

Alignment explanation


    Indices: 556--582  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        546 ATGAAAAATT

                          
        556 ACTTATTACTCATC
          1 ACTTATTACTCATC

                         
        570 ACTTATTACTCAT
          1 ACTTATTACTCAT

        583 AAAGAGTCTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44


Consensus pattern (14 bp):   
ACTTATTACTCATC
Done.