Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000886.1 Corchorus olitorius cultivar O-4 contig00886, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1096
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30


Found at i:430 original size:19 final size:19

Alignment explanation


    Indices: 408--449  Score: 57
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        398 TTCTTTCAAT

                        *   *  
        408 ATTAAATTTTTATTTATAA
          1 ATTAAATTTTTACTTAAAA

                *              
        427 ATTATATTTTTACTTAAAA
          1 ATTAAATTTTTACTTAAAA

                
        446 ATTA
          1 ATTA

        450 CTCATAATCA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55


Consensus pattern (19 bp):   
ATTAAATTTTTACTTAAAA
Done.