Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008861.1 Corchorus olitorius cultivar O-4 contig08888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 941

Length: 1569
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:610 original size:31 final size:30

Alignment explanation


    Indices: 552--619  Score: 75
    Period size: 29  Copynumber: 2.2  Consensus size: 30

        542 CTTTTGCCTC

                    *   *         *       
        552 CTAAACTTTAATTTGAGACATTTTG-CCCT
          1 CTAAACTTCAATATGAGACATTATGCCCCT

                                            
        581 CTAAACTTGCAATATGAGGACATTATGCCCCT
          1 CTAAACTT-CAATATGA-GACATTATGCCCCT

                   
        613 CTCAAAC
          1 CT-AAAC

        620 AATATTGCTG


Statistics
Matches: 32,  Mismatches: 3, Indels: 4
        0.82            0.08        0.10

Matches are distributed among these distances:
  29    8  0.25
  30    6  0.19
  31    8  0.25
  32    6  0.19
  33    4  0.12

ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32


Consensus pattern (30 bp):   
CTAAACTTCAATATGAGACATTATGCCCCT
Done.