Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008905.1 Corchorus olitorius cultivar O-4 contig08932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 671

Length: 1119
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27


Found at i:984 original size:25 final size:25

Alignment explanation


    Indices: 950--1001  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        940 GCTGGGCAAG

                                     
        950 AATAACGTCTGGATTCAATAACTTC
          1 AATAACGTCTGGATTCAATAACTTC

                                     
        975 AATAACGTCTGGATTCAATAACTTC
          1 AATAACGTCTGGATTCAATAACTTC

              
       1000 AA
          1 AA

       1002 GGATCCTGGG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31


Consensus pattern (25 bp):   
AATAACGTCTGGATTCAATAACTTC
Done.