Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008909.1 Corchorus olitorius cultivar O-4 contig08936, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:24 original size:18 final size:18

Alignment explanation


    Indices: 1--35  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

                              
          1 CATCAATAGCGTCACTAG
          1 CATCAATAGCGTCACTAG

                    *        
         19 CATCAATATCGTCACTA
          1 CATCAATAGCGTCACTA

         36 TCACTATCAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26


Consensus pattern (18 bp):   
CATCAATAGCGTCACTAG
Done.