Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000891.1 Corchorus olitorius cultivar O-4 contig00891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32


Found at i:116 original size:25 final size:25

Alignment explanation


    Indices: 73--123  Score: 61
    Period size: 23  Copynumber: 2.0  Consensus size: 25

         63 TGATAAATTT

                                       
         73 TTATATATAGTTATGATTTCTTAAAAA
          1 TTATATATAGTTATGA-TT-TTAAAAA

                  *                  
        100 TTATATGTA-TTAT-ATTTTAAAAA
          1 TTATATATAGTTATGATTTTAAAAA

             
        123 T
          1 T

        124 AATGTGGAGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  23    8  0.35
  24    2  0.09
  25    1  0.04
  26    4  0.17
  27    8  0.35

ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51


Consensus pattern (25 bp):   
TTATATATAGTTATGATTTTAAAAA
Done.