Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008910.1 Corchorus olitorius cultivar O-4 contig08937, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40


Found at i:290 original size:154 final size:154

Alignment explanation


    Indices: 19--1046  Score: 1552
    Period size: 154  Copynumber: 6.7  Consensus size: 154

          9 ATTCTTTAAG

                                         *                                   
         19 TTGTTTATGGCCTAACTATAATCATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT
          1 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT

                                         *         **                        
         84 GGAACACTTGTTATTTTGGGCCTATCGCGTCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGG
         66 GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG

                      *             
        149 CAAACCTCAAGGCTTTTCTTTCCA
        131 CAAACCTCAAAGCTTTTCTTTCCA

                           *                         *          *            
        173 TTGTTTATGGCCTAAGTATAATCATTTTGGTGAGATTAGTCTACTGTGAAGTATTTAGCTCATTT
          1 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT

                                       *                                     
        238 GGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG
         66 GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG

                      *             
        303 CAAACCTCAATGCTTTTCTTTCCA
        131 CAAACCTCAAAGCTTTTCTTTCCA

                      *                                 *             *      
        327 TTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACAGTGAAGTTTTTAGTTCATTT
          1 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT

                *            *                     **                        
        392 GGAAAACTTGTTATTTTAGGCCTATCGCGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGG
         66 GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG

                    * *       *     
        457 CAAACCTCGAGGCTTTTCCTTCCA
        131 CAAACCTCAAAGCTTTTCTTTCCA

                           *                       * *          *            
        481 TTGTTTATGGCCTAAGTATAATCATTTTGGTGAGATTAGACTACTGTGAAGTATTTAGCTCATTT
          1 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT

                        **   *         *                              *      
        546 GGAACACTTGTTCGTTTAGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCAATTTGG
         66 GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG

                 *        *      ** 
        611 CAAACTTCAAAGCTATTCTTTAAA
        131 CAAACCTCAAAGCTTTTCTTTCCA

              *          *        *      *                 * *   *           
        635 TTCTTTATGGCCTGACTATAATAATTTTGATGAGATTAGTCCACTGTTAGGTTCTTAGCTCATTT
          1 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT

                           *           *                                     
        700 GGAACACTTGTTATTGTGGGCCTATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG
         66 GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG

                                    
        765 CAAACCTCAAAGCTTTTCTTTCCA
        131 CAAACCTCAAAGCTTTTCTTTCCA

                      *             *                            *     *     
        789 TTGTTTATGGTCTAACTATAATCAATTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGCACATTT
          1 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT

             *                         *                  *                  
        854 GAAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTAGAATCGTCTTCGATTTGG
         66 GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG

                      *             
        919 CAAACCTCAATGCTTTTCTTTCCA
        131 CAAACCTCAAAGCTTTTCTTTCCA

                      *                    * *                       *       
        943 TTGTTTATGGACTAACTATAATCATTTTGGTTATATTAGTCCACTGTGAAGTTTTTATCTCATTT
          1 TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT

                    *                 *            
       1008 GGAACACTCGTTATTTTGGGCCTATCACGGCCCATTAGT
         66 GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGT

       1047 GAC


Statistics
Matches: 784,  Mismatches: 90, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
 154  784  1.00

ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40


Consensus pattern (154 bp):   
TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTT
GGAACACTTGTTATTTTGGGCCTATCGCGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG
CAAACCTCAAAGCTTTTCTTTCCA

Done.