Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008922.1 Corchorus olitorius cultivar O-4 contig08949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23


Found at i:688 original size:23 final size:24

Alignment explanation


    Indices: 653--703  Score: 59
    Period size: 23  Copynumber: 2.2  Consensus size: 24

        643 AAAGAGCGGC

                 *        * *       
        653 AAGTGCTTGAGAGTGAGAAG-TTT
          1 AAGTGATTGAGAGTAACAAGTTTT

                    *               
        676 AAGTGATTTAGAGTAACAAGTTTT
          1 AAGTGATTGAGAGTAACAAGTTTT

                
        700 AAGT
          1 AAGT

        704 TAAGGATTAG


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  23   16  0.70
  24    7  0.30

ACGTcount: A:0.35, C:0.04, G:0.27, T:0.33


Consensus pattern (24 bp):   
AAGTGATTGAGAGTAACAAGTTTT
Done.