Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008926.1 Corchorus olitorius cultivar O-4 contig08953, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1607
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:598 original size:21 final size:21

Alignment explanation


    Indices: 574--665  Score: 123
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        564 CTTAGGCATT

                         *       
        574 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        595 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *   *      * 
        616 TCCAATGAACTTCGAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        637 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        658 TCCAATGA
          1 TCCAATGA

        666 ACTTCTAGCA


Statistics
Matches: 62,  Mismatches: 8, Indels: 2
        0.86            0.11        0.03

Matches are distributed among these distances:
  20    2  0.03
  21   60  0.97

ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.