Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008927.1 Corchorus olitorius cultivar O-4 contig08954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1061
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.35


Found at i:492 original size:14 final size:14

Alignment explanation


    Indices: 473--511  Score: 69
    Period size: 14  Copynumber: 2.8  Consensus size: 14

        463 GTAGTTTTAA

                          
        473 TCACTTACTATTTT
          1 TCACTTACTATTTT

                          
        487 TCACTTACTATTTT
          1 TCACTTACTATTTT

                  *    
        501 TCACTTTCTAT
          1 TCACTTACTAT

        512 AACTACTTCT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  14   24  1.00

ACGTcount: A:0.21, C:0.23, G:0.00, T:0.56


Consensus pattern (14 bp):   
TCACTTACTATTTT
Done.