Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008929.1 Corchorus olitorius cultivar O-4 contig08956, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1687
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34


Found at i:990 original size:24 final size:24

Alignment explanation


    Indices: 963--1009  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        953 ATCGGTAAAC

                  *       *  *      
        963 CGGCCAGTTCAACCGCGGTCATAT
          1 CGGCCAATTCAACCACGATCATAT

                                   
        987 CGGCCAATTCAACCACGATCATA
          1 CGGCCAATTCAACCACGATCATA

       1010 CCAGGTCAAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19


Consensus pattern (24 bp):   
CGGCCAATTCAACCACGATCATAT
Done.