Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008932.1 Corchorus olitorius cultivar O-4 contig08959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1010
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33


Found at i:833 original size:22 final size:22

Alignment explanation


    Indices: 808--850  Score: 86
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        798 AATTAACAAT

                                  
        808 TAAGTAGAGTCTTAAGGCAAAA
          1 TAAGTAGAGTCTTAAGGCAAAA

                                 
        830 TAAGTAGAGTCTTAAGGCAAA
          1 TAAGTAGAGTCTTAAGGCAAA

        851 TTCTTTTCTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.44, C:0.09, G:0.23, T:0.23


Consensus pattern (22 bp):   
TAAGTAGAGTCTTAAGGCAAAA
Done.