Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008947.1 Corchorus olitorius cultivar O-4 contig08974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1091
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35


Found at i:320 original size:45 final size:42

Alignment explanation


    Indices: 256--349  Score: 127
    Period size: 45  Copynumber: 2.2  Consensus size: 42

        246 AACAACAATT

                   *               *  *                  
        256 AATATTAACTTTATTTTGATGAATTATCTAGAGATTGAGGAGTAG
          1 AATATTAGCTTTATTTTGATGAACTACCTAGAGA-T--GGAGTAG

                                                      
        301 AATATTAGCTTTATTTTGATGAACTACCTAGAGATGGAGTAG
          1 AATATTAGCTTTATTTTGATGAACTACCTAGAGATGGAGTAG

                    
        343 AAT-TTAG
          1 AATATTAG

        350 GTAATACACT


Statistics
Matches: 46,  Mismatches: 3, Indels: 4
        0.87            0.06        0.08

Matches are distributed among these distances:
  41    4  0.09
  42   10  0.22
  44    1  0.02
  45   31  0.67

ACGTcount: A:0.35, C:0.06, G:0.20, T:0.38


Consensus pattern (42 bp):   
AATATTAGCTTTATTTTGATGAACTACCTAGAGATGGAGTAG
Done.