Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008953.1 Corchorus olitorius cultivar O-4 contig08980, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28


Found at i:786 original size:21 final size:21

Alignment explanation


    Indices: 760--801  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        750 AGGTGAAAAA

                                 
        760 GACAAGCCTTATAAACAGGCC
          1 GACAAGCCTTATAAACAGGCC

                      *          
        781 GACAAGCCTTCTAAACAGGCC
          1 GACAAGCCTTATAAACAGGCC

        802 TTAGTGAACA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.36, C:0.31, G:0.19, T:0.14


Consensus pattern (21 bp):   
GACAAGCCTTATAAACAGGCC
Done.