Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008958.1 Corchorus olitorius cultivar O-4 contig08985, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 845

Length: 1409
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26


Found at i:1135 original size:25 final size:25

Alignment explanation


    Indices: 1101--1148  Score: 96
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1091 AGACATACCC

                                     
       1101 ATCATAATCTAGTAGATTGACTTGA
          1 ATCATAATCTAGTAGATTGACTTGA

                                   
       1126 ATCATAATCTAGTAGATTGACTT
          1 ATCATAATCTAGTAGATTGACTT

       1149 AAACCTTCTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38


Consensus pattern (25 bp):   
ATCATAATCTAGTAGATTGACTTGA
Done.