Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008959.1 Corchorus olitorius cultivar O-4 contig08986, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1895
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37


Found at i:219 original size:15 final size:15

Alignment explanation


    Indices: 201--230  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        191 ACGATCTTGT

                           
        201 GACATTAATGAATGC
          1 GACATTAATGAATGC

                           
        216 GACATTAATGAATGC
          1 GACATTAATGAATGC

        231 ATATGAAAAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27


Consensus pattern (15 bp):   
GACATTAATGAATGC
Done.