Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008977.1 Corchorus olitorius cultivar O-4 contig09005, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1237
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30


Found at i:53 original size:22 final size:22

Alignment explanation


    Indices: 27--71  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

         17 TGCGCTACCA

                                  
         27 TTTCAGGAGGGAGTAAGACGAT
          1 TTTCAGGAGGGAGTAAGACGAT

                                  
         49 TTTCAGGAGGGAGTAAGACGAT
          1 TTTCAGGAGGGAGTAAGACGAT

             
         71 T
          1 T

         72 CCCGACATTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.31, C:0.09, G:0.36, T:0.24


Consensus pattern (22 bp):   
TTTCAGGAGGGAGTAAGACGAT
Done.